List of Research Output | FY 2005

Papers, peer-reviewed conference proceedings etc.

【Computer Science Research and Development Office】

K. Higuchi, T. Otani, Y. Hasegawa, Y. Suzuki, N. Yamagishi, K. Kimura, T. Aoyagi, N. Nakajima, M. Fukuda, T. Imamura, G. Yagawa “Development of a virtual research environment in ITBL project” International Conference on Supercomputing in Nuclear Applications
Y. Shu, N. Nakajima “Development of a quake-proof information inference system by using data mining technology” 11th International Conference on Human-Computer Interaction (HCI International 2005)
Y. Shu, N. Nakajima “Building plant quake-proof information inference system based on hybrid data mining approach” 1st International Workshop on Risk Management System with Intelligent Data Analysis (RMDA2005) in Conjunction with 19th Annual Conference of the Japanese Society for Artificial Intelligence (JSAI2005)
Y. Shu, K. Furuta “An Inference Method of Team Situation Awareness Based on Mutual Awareness” Cognition, Technology and Work, Vol.7, No.4
Y. Shu “Analysis of Power Plant Quake-Proof Information based on Hybrid Data Mining Method” Advanced Engineering Informatics (submitted for publication)
Y. Suzuki, T. Minami, M. Tani and N. Nakajima “Interoperability UNICORE and ITBL” WCGC2006 Conference (submitted for publication)
M. Ida “Avoided crossings in three coupled oscillators as a model system of acoustic bubbles” Physical Review E, Vol.72, No.3
M. Ida “Phase properties and interaction force of acoustically interacting bubbles; A Complementary study of the transition frequency” Physics of Fluids, Vol.17, No.9
A. Nishida “WAVE PROPAGATION PROPERTIES OF FRAME TRUCTURES -Formulation for Three Dimensional Frame Structures-” JSME International Journal (Series B), Vol.49, No.2, PP.360-367
N. Aiba, S. Tokuda, T. Ishizawa, M. Okamoto “Extension of the Newcomb equation into the vacuum for the stability analysis of tokamak edge plasmas” Computer Physics Communications, Vol.175, No.4, PP.269-289
N. Aiba, S. Tokuda et al. “Analysis of an aspect ratio effect on the stability of external MHD modes in tokamaks with Newcomb equation” Accepted to J. Plasma Phys.
M. Furukawa, D. Sakata, Z. Yoshida, S. Tokuda “Energy transfer among coupled oscillators representing a ballooning mode in toroidally rotating tokamak” Accepted to J. Plasma Phys.

【Simulation Technology Research and Development Office】

M. Shiga, W. Shinoda “Calculation of heat capacities of light and heavy water by path integral molecular dynamics” Journal of Chemical Physics, Vol.123, No.13 (2005) 134502-134509
T. Watanabe, K. Ebihara “Numerical simulation of droplet flows and evaluation of interfacial area” Journal of Fluids Engineering, Vol.124, No.3, 576-583
M. Itakura, H. Kaburaki et al. “Branching mechanism of intergranular crack propagation in three dimensions” Physical Review E, Vol.71, No.5, 0551021-0551024
M. Machida, S. Yamada, Y. Ohashi and H. Matsumoto “Novel superfluidity in a trapped gas of fermi atoms with repulsive interaction loaded on an optical lattice” Physical. Review Letters. Vol.93, No.20
M. Yamaguchi, M. Shiga, H. Kaburaki “Response to comment on "Grain Boundary Decohesion by Impurity Segregation in a Nickel-Sulfur System” Science, Vol.309, No.5741
T. Watanabe “Numerical simulation of droplet dynamics using level set method 11th International Topical Meeting on Nuclear Reactor Thermal Hydraulics (NURETH-11)”
M. Machida, S. Yamada, Y. Ohashi and H. Matsumoto “Reply to comment on “Novel superfluidity in a trapped gas of fermi atoms with repulsive interaction loaded on an optical lattice”” Physical. Review Letters, Voi.95, No.21
S. Yamada, T. Imamura and M. Machida “16.447Tflops and 159-Billion-dimensional Exact- diagonalization for Trapped Fermion-Hubbard Model on the Earth Simulator” SuperComputing SC05
M. Machida, T. Koyama and Y. Ohashi “Vortex structure in weak to strong coupling superconductors: Crossover from BCS to BEC” 18-th International Symposium on Superconductivity Physica C
M. Machida, S. Yamada, Y. Ohashi and H. Matsumoto “Novel Pairing in the Hubbard Model with Confinement Potential” Physica C, Vol.445-448, PP.90-93
K. Ebihara “Dynamical Pressure Anisotropy in Liquid-gas Model of Lattice-Gas” International Journalof Modern Physics C
S. Metsugi et al “Sequence analysis of the gliding protein Gli349 in Mycoplasma mobile” Biophysics, Vol.1, 33-43
Y. Yonetani “A severe artifact in simulation of liquid water using along cut-off length; appearance of a strange layer structure” Chemical physics letters, Vol.406, 46-53 (2005)
K. Nakamura and N. Go “Function and molecular evolution of multicopper blue proteins” Cellular and Molecular Life Science, Vol.62, No.18, 2050-2060 (2005)
A. Matsumoto et al “Normal-mode analysis of circular DNA at the base-pair level, 1; Comparison of computed motions with the predicted behavior of an ideal elastic rod” Journal of Chemical Theory and Computation, Vol.1, No.1, 117-129
A. Matsumoto et al “Normal-mode analysis of Circular DNA at the base-pair level, 2; Large-scale configurational transformation of a naturally curved molecule” Journal of Chemical Theory and Computation, Vol.1, No.1, 130-142
S. Metsugi “Influence of multidimensionaiity on convergence of sampling in protein simulation” Journal of the Physical Society of Japan, Vol.74, No.6, 1865-1870

Talks at international and Japanese conferences

【Computer Science Research and Development Office】

M. Ida “Multibubble Dynamics: Phase, Sift, Transition Frequency and Avoided Crossing” THE 2005 APS Division of Fluid Dynamics 58th Annual meeting (20-22, November 2005 Chicago, U.S.A) Bulletin of The American Physical Society, DFD 2005, Vol.50, No.9 249 (2005)
O. Hazama, H. Matsubara, R. Tian, A. Nishida, Y. Suzuki, M. Tani and N. Nakajima “Towards Construction of a Numerical Testbed for Nuclear Power Plants” 7th MpCCI User Forum (21-22, February 2006 Sankt Augustin, Germany) Proceedings of 7th MpCCI User Forum (in press) (2006)
N. Aiba, S. Tokuda et al “Ideal MHD stability code MARG2D for the analysis of external MHD modes in JT-60U plasma” 47th APS Division of Plasma Physics Meeting (24-27, Oct. Denver USA)

【Simulation Technology Research and Development Office】

M. Machida “Numerical Experiments for Non-equilibrium Superconducting Dynamics at the Transition Edge in MgB₂” Nano-Virtual-Labs Joint Workshop on Superconductivity (NVLS2005) (Awaji-shima, Dec.19-22 2005)
M. Machida, Y. Ohashi and T. Koyama “Vortex Structure and Dynamics in Fermi Superfluid Gas” 2006 American Physical Society Marchi Meeting, 13-17, March 2006, Boltimore U.S.A.
T. Suzudo, M. Itakura and H. Kaburaki “Meso-Scale Approaches to the Simuration of the Microstructure Formation Observed at Higi-Burnup UO₂ fuel” Innovative Nanoscale Approach to Dynamic Studies of Materials (Okinawa, Jan. 9-14 2006)
F. Shimizu, S. Ogata, H. Kaburaki and J. Li “Approaching the Universal Yield Point of Bulk Metallic Glasses from Molecualr Dynamics Simulations” Materials Research Society 2005 Fall Meeting, Nov. 2005, Boston MA, U.S.A. 665 (2005) (Z16.1)
K. Ebihara and H. Kaburaki “Lattice boltzmann simulation of solution chemistry for crevice corrosion” The 14th International conference on discrete simulation of fluid dynamics in complex systems (Aug. 2005)
H. Kaburaki et al “Macroscopic simulations on the evolution of system of dislocations in the presence of a grain boundary” Micromechanics and microstructure evolution conference (Sep. 2005)
T. Suzudo et al “Meso-Scale Approaches to the Simulation of the Microstructure Formation Observed at High-Burnup UO₂ fuel” New Crossover Workshop-2 (0ct. 2005)
T. Suzudo et al “Cellular automaton model of fission gas behavior in nuclear fuel” Micromechanics and microstructure evolution conference (Sep. 2005)
H. Kaburaki et al “Molecular dynamics and quasi-two dimensional dislocation dynamics simulations on the hardening mechanism of FCC metals” Materials Research Society 2005 Fall Meeting, Nov. 2005, Boston MA, U.S.A. 665 (2005)
H. Kaburaki et al “First-principles calculations on the embitterment mechanism of bcc iron grain boundaries by impurity segregation” Materials Research Society 2005 Fall Meeting, Nov. 2005, Boston MA, U.S.A. 665 (2005)